Stem-loop ssa-mir-27d

Accession

MI0026663

Description

Salmo salar ssa-mir-27d precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

AGGACUUAGCACACAUGUGAACAcuguaaguuuaccuccaugUUCACAGUGGUUAAGUUCUG
((((((((((.(((.((((((((.((..((.....)).))))))))))))))))))))))).

Structure

-          A   A        c  ua  u 
 AGGACUUAGC CAC UGUGAACA ug  ag u
 |||||||||| ||| |||||||| ||  || u
 UCUUGAAUUG GUG ACACUUgu ac  uc a
G          -   -        -  -c  c 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-27d-5p

• Accession: MIMAT0032581
• Description: Salmo salar ssa-miR-27d-5p mature miRNA
• Sequence: 1 - AGGACUUAGCACACAUGUGAACA - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-27d-3p

• Accession: MIMAT0032582
• Description: Salmo salar ssa-miR-27d-3p mature miRNA
• Sequence: 43 - UUCACAGUGGUUAAGUUCUG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482