miRBase entry: ssa-mir-27c-2

Stem-loop ssa-mir-27c-2


Accession
MI0026662
Description
Salmo salar ssa-mir-27c-2 precursor miRNA
Gene family
MIPF0000036; mir-27


Sequence

AGAGCUUAGCUAAUUGGUGAGCauugaucccucuuauauguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure
--A           AUUG       uugauccc 
   GAGCUUAGCUA    GUGAGCa        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        c
UGA           --GA       uguauauu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-27c-3p

Accession MIMAT0032579
Description Salmo salar ssa-miR-27c-3p mature miRNA
Sequence 44 - UUCACAGUGGCUAAGUUCAGU - 64
Evidence experimental
Illumina [1]

Mature ssa-miR-27c-2-5p

Accession MIMAT0032580
Description Salmo salar ssa-miR-27c-2-5p mature miRNA
Sequence 1 - AGAGCUUAGCUAAUUGGUGAGC - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482