Stem-loop ssa-mir-27a-2

Accession

MI0026658

Description

Salmo salar ssa-mir-27a-2 precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

CAGGACUUAGCUCGCUUUGUGAacagaucugugaaagccuaugUUCACAGUGGCUAAGUUCCGCU
..(((((((((.((((..(((((((...((.....))....))))))))))))))))))))....

Structure

--CA         U    UU       -gau  g 
    GGACUUAGC CGCU  GUGAaca    cu u
    ||||||||| ||||  |||||||    || g
    CUUGAAUCG GUGA  CACUUgu    ga a
UCGC         -    --       aucc  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-27a-3p

• Accession: MIMAT0032574
• Description: Salmo salar ssa-miR-27a-3p mature miRNA
• Sequence: 44 - UUCACAGUGGCUAAGUUCCGCU - 65
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-27a-2-5p

• Accession: MIMAT0032575
• Description: Salmo salar ssa-miR-27a-2-5p mature miRNA
• Sequence: 1 - CAGGACUUAGCUCGCUUUGUGA - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482