Stem-loop ssa-mir-26a-5

Accession

MI0026653

Description

Salmo salar ssa-mir-26a-5 precursor miRNA

Gene family

MIPF0000043; mir-26

Literature search

2 open access papers mention ssa-mir-26a-5
(6 sentences)

Sequence

UUCAAGUAAUCCAGGAUAGGCUuguuuaagugggcacagCCUAUUCGGGAUGACUUGGUUC
.((((((.((((.((((((((((((((....))))).))))))))).)))).))))))...

Structure

--U      A    A         -     a 
   UCAAGU AUCC GGAUAGGCU uguuu a
   |||||| |||| ||||||||| |||||  
   GGUUCA UAGG CUUAUCCga acggg g
CUU      G    G         c     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-26a-5p

• Accession: MIMAT0032563
• Description: Salmo salar ssa-miR-26a-5p mature miRNA
• Sequence: 1 - UUCAAGUAAUCCAGGAUAGGCU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-26a-5-3p

• Accession: MIMAT0032567
• Description: Salmo salar ssa-miR-26a-5-3p mature miRNA
• Sequence: 40 - CCUAUUCGGGAUGACUUGGUUC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482