Stem-loop ssa-mir-25-3

Accession

MI0026648

Description

Salmo salar ssa-mir-25-3 precursor miRNA

Gene family

MIPF0000013; mir-25

Literature search

4 open access papers mention ssa-mir-25-3
(24 sentences)

Sequence

AGGCGGAGACUUGGGCAAUUGCCagccauuccagacggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((.(((.............)))))))).)..))))).))))..

Structure

--    G     UU G     U   agcca 
  AGGC GAGAC  G GCAAU GCC     u
  |||| |||||  | ||||| |||     u
  UCUG CUCUG  C CGUUA Cgg     c
AG    G     UU A     -   cagac 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-25-3p

• Accession: MIMAT0032561
• Description: Salmo salar ssa-miR-25-3p mature miRNA
• Sequence: 39 - CAUUGCACUUGUCUCGGUCUGA - 60
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-25-3-5p

• Accession: MIMAT0032562
• Description: Salmo salar ssa-miR-25-3-5p mature miRNA
• Sequence: 1 - AGGCGGAGACUUGGGCAAUUGCC - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482