miRBase entry: ssa-mir-25-1

Stem-loop ssa-mir-25-1


Accession
MI0026646
Description
Salmo salar ssa-mir-25-1 precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
4 open access papers mention ssa-mir-25-1
(24 sentences)

Sequence

AGGCGGAGUCUUGGGCAAUUGCCggcaaucuuaagaggCAUUGCACUUGUCUCGGUCUGA
((((.(((.(..(.(((((.(((.............)))))))).)..).))).))))..

Structure
--    G   U UU G     U   ggcaa 
  AGGC GAG C  G GCAAU GCC     u
  |||| ||| |  | ||||| |||     c
  UCUG CUC G  C CGUUA Cgg     u
AG    G   U UU A     -   agaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-25-5p

Accession MIMAT0032560
Description Salmo salar ssa-miR-25-5p mature miRNA
Sequence 1 - AGGCGGAGUCUUGGGCAAUUGCC - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-25-3p

Accession MIMAT0032561
Description Salmo salar ssa-miR-25-3p mature miRNA
Sequence 39 - CAUUGCACUUGUCUCGGUCUGA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482