miRBase entry: ssa-mir-23b

Stem-loop ssa-mir-23b


Accession
MI0026640
Description
Salmo salar ssa-mir-23b precursor miRNA
Gene family
MIPF0000027; mir-23


Sequence

GGGUUCCUGGCGUGCUGAUUugugacuuaagauaaaAUCACAUUGCCAGGGAUUACCACC
((((((((((((((.((((((.............)))))))).))))))))))..))...

Structure
---  --          -  C      gugac 
   GG  GUUCCUGGCG UG UGAUUu     u
   ||  |||||||||| || ||||||     u
   CC  UAGGGACCGU AC ACUAaa     a
CCA  AU          U  -      auaga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-23b-5p

Accession MIMAT0032552
Description Salmo salar ssa-miR-23b-5p mature miRNA
Sequence 1 - GGGUUCCUGGCGUGCUGAUU - 20
Evidence experimental
Illumina [1]

Mature ssa-miR-23b-3p

Accession MIMAT0032553
Description Salmo salar ssa-miR-23b-3p mature miRNA
Sequence 37 - AUCACAUUGCCAGGGAUUACCACC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482