Stem-loop ssa-mir-23a-4

Accession

MI0026637

Description

Salmo salar ssa-mir-23a-4 precursor miRNA

Gene family

MIPF0000027; mir-23

Literature search

2 open access papers mention ssa-mir-23a-4
(4 sentences)

Sequence

AGGGUUCCUGGCACAGUGAUUUggugcacaaauauaaacgaaaAUCACAUUGCCAGGGAUUUCC
.((((((((((((..(((((((.((............))..)))))))..))))))))))))..

Structure

-A            CA       -g  gcaca 
  GGGUUCCUGGCA  GUGAUUU  gu     a
  ||||||||||||  |||||||  ||      
  UUUAGGGACCGU  CACUAaa  ca     a
CC            UA       ag  aauau 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-23a-3p

• Accession: MIMAT0032549
• Description: Salmo salar ssa-miR-23a-3p mature miRNA
• Sequence: 44 - AUCACAUUGCCAGGGAUUUCC - 64
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-23a-4-5p

• Accession: MIMAT0032550
• Description: Salmo salar ssa-miR-23a-4-5p mature miRNA
• Sequence: 1 - AGGGUUCCUGGCACAGUGAUUU - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482