Stem-loop ssa-mir-222b

Accession

MI0026632

Description

Salmo salar ssa-mir-222b precursor miRNA

Gene family

MIPF0000051; mir-221

Literature search

1 open access papers mention ssa-mir-222b
(2 sentences)

Sequence

UGCUCAGUAGUCAGUGUAGAUCcuguggggcagucagcAGCUACAUCUGGCUACUGGGUC
.((((((((((((((((((...((((.((....)).))))))))).))))))))))))).

Structure

U             -     AUC    g  g 
 GCUCAGUAGUCAG UGUAG   cugu gg c
 ||||||||||||| |||||   |||| ||  
 UGGGUCAUCGGUC ACAUC   GAcg cu a
C             U     ---    a  g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-222b-5p

• Accession: MIMAT0032542
• Description: Salmo salar ssa-miR-222b-5p mature miRNA
• Sequence: 1 - UGCUCAGUAGUCAGUGUAGAUC - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-222b-3p

• Accession: MIMAT0032543
• Description: Salmo salar ssa-miR-222b-3p mature miRNA
• Sequence: 39 - AGCUACAUCUGGCUACUGGGUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482