miRBase entry: ssa-mir-222a-2

Stem-loop ssa-mir-222a-2


Accession
MI0026631
Description
Salmo salar ssa-mir-222a-2 precursor miRNA
Gene family
MIPF0000051; mir-221

Literature search
1 open access papers mention ssa-mir-222a-2
(4 sentences)

Sequence

UGCUCAGUAGGCAGUGUAGAUCCUguguaauuaucagcAGCUACAUCUGGCUACUGGGUCUC
.(((((((((.((((((((...(((.........)))...))))).))).)))))))))...

Structure
--U         G   -     AUC   ugu 
   GCUCAGUAG CAG UGUAG   CUg   a
   ||||||||| ||| |||||   |||   a
   UGGGUCAUC GUC ACAUC   gac   u
CUC         G   U     GAc   uau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-222a-5p

Accession MIMAT0032540
Description Salmo salar ssa-miR-222a-5p mature miRNA
Sequence 1 - UGCUCAGUAGGCAGUGUAGAUCCU - 24
Evidence experimental
Illumina [1]

Mature ssa-miR-222a-3p

Accession MIMAT0032541
Description Salmo salar ssa-miR-222a-3p mature miRNA
Sequence 39 - AGCUACAUCUGGCUACUGGGUCUC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482