Stem-loop ssa-mir-21b

Accession

MI0026628

Description

Salmo salar ssa-mir-21b precursor miRNA

Gene family

MIPF0000060; mir-21

Literature search

3 open access papers mention ssa-mir-21b
(17 sentences)

Sequence

UAGCUUAUCAGACUGGUGUUGGCuguuacauugcaaggCGACAACAGUCUGUAGGCUGUC
(((((((.(((((((.(((((.((((......)).)).))))).))))))))))))))..

Structure

--       U       G     G  -  ua 
  UAGCUUA CAGACUG UGUUG Cu gu  c
  ||||||| ||||||| ||||| || ||   
  GUCGGAU GUCUGAC ACAGC ga cg  a
CU       -       A     g  a  uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-21b-5p

• Accession: MIMAT0032536
• Description: Salmo salar ssa-miR-21b-5p mature miRNA
• Sequence: 1 - UAGCUUAUCAGACUGGUGUUGGC - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-21b-3p

• Accession: MIMAT0032537
• Description: Salmo salar ssa-miR-21b-3p mature miRNA
• Sequence: 39 - CGACAACAGUCUGUAGGCUGUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482