Stem-loop ssa-mir-219c-2

Accession

MI0026625

Description

Salmo salar ssa-mir-219c-2 precursor miRNA

Gene family

MIPF0000044; mir-219

Sequence

UGAUUGUCCAAACGCAAUUCUUGugucugccucccugaaaccaGGAGUUGUGGAUGGACAUCACG
((((.(((((..(((((((((((.((.............)))))))))))))..)))))))))..

Structure

--    U     AA           u  cugcc 
  UGAU GUCCA  CGCAAUUCUUG gu     u
  |||| |||||  ||||||||||| ||     c
  ACUA CAGGU  GUGUUGAGGac ca     c
GC    -     AG           -  aaguc 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-219c-5p

• Accession: MIMAT0032530
• Description: Salmo salar ssa-miR-219c-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUUG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-219c-2-3p

• Accession: MIMAT0032532
• Description: Salmo salar ssa-miR-219c-2-3p mature miRNA
• Sequence: 44 - GGAGUUGUGGAUGGACAUCACG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482