miRBase entry: ssa-mir-218-2

Stem-loop ssa-mir-218-2


Accession
MI0026619
Description
Salmo salar ssa-mir-218-2 precursor miRNA
Gene family
MIPF0000026; mir-218


Sequence

UUGUGCUUGAUCUAACCAUGUGcccccgccuacacucgccucACAUGGUUCCGUCAAGCACCAGG
..(((((((((..(((((((((.....((........))..)))))))))..)))))))))....

Structure
--UU         CU         ccccc  cua 
    GUGCUUGAU  AACCAUGUG     gc   c
    |||||||||  |||||||||     ||    
    CACGAACUG  UUGGUACAc     cg   a
GGAC         CC         ---uc  cuc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-218-5p

Accession MIMAT0032524
Description Salmo salar ssa-miR-218-5p mature miRNA
Sequence 1 - UUGUGCUUGAUCUAACCAUGUG - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-218-3p

Accession MIMAT0032525
Description Salmo salar ssa-miR-218-3p mature miRNA
Sequence 43 - ACAUGGUUCCGUCAAGCACCAGG - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482