miRBase entry: ssa-mir-214-3

Stem-loop ssa-mir-214-3


Accession
MI0026613
Description
Salmo salar ssa-mir-214-3 precursor miRNA
Gene family
MIPF0000062; mir-214

Literature search
1 open access papers mention ssa-mir-214-3
(3 sentences)

Sequence

UGCCUGUCUACACUUGCUGUGCagaacuuccuggaaccugUACAGCAGGCACAGACAGGCAGA
(((((((((...((((((((((((...(((...))).))))))))))))...)))))))))..

Structure
--         ACA            aac   c 
  UGCCUGUCU   CUUGCUGUGCag   uuc  
  |||||||||   ||||||||||||   ||| u
  ACGGACAGA   GGACGACAUguc   aag  
AG         CAC            --c   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-214-5p

Accession MIMAT0032514
Description Salmo salar ssa-miR-214-5p mature miRNA
Sequence 1 - UGCCUGUCUACACUUGCUGUGC - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-214-3p

Accession MIMAT0032515
Description Salmo salar ssa-miR-214-3p mature miRNA
Sequence 41 - UACAGCAGGCACAGACAGGCAGA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482