miRBase entry: ssa-mir-20a-1

Stem-loop ssa-mir-20a-1


Accession
MI0026601
Description
Salmo salar ssa-mir-20a-1 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
1 open access papers mention ssa-mir-20a-1
(6 sentences)

Sequence

UAAAGUGCUUAUAGUGCAGGUAGuauauuaucuacaucuACUGCAAUGUGAGCACUUCCAGU
..(((((((((((.(((((((((........)))).....))))).))))))))))).....

Structure
---UA           G     -----    uau 
     AAGUGCUUAUA UGCAG     GUAG   a
     ||||||||||| |||||     ||||    
     UUCACGAGUGU ACGUC     cauc   u
UGACC           A     Aucua    uau 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-20a-5p

Accession MIMAT0032502
Description Salmo salar ssa-miR-20a-5p mature miRNA
Sequence 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-20a-1-3p

Accession MIMAT0032503
Description Salmo salar ssa-miR-20a-1-3p mature miRNA
Sequence 40 - ACUGCAAUGUGAGCACUUCCAGU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482