miRBase entry: ssa-mir-200a-2

Stem-loop ssa-mir-200a-2


Accession
MI0026582
Description
Salmo salar ssa-mir-200a-2 precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

CAUCUUACGAGGCAGCAUUGGAuauaaucacucucucUAAUACUGCCUGGUAAUGAUGAU
((((((((.((((((.((((((.............)))))).)))))).)))).))))..

Structure
--    -    G      C      uauaa 
  CAUC UUAC AGGCAG AUUGGA     u
  |||| |||| |||||| ||||||     c
  GUAG AAUG UCCGUC UAAUcu     a
UA    U    G      A      cucuc 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-200a-3p

Accession MIMAT0032476
Description Salmo salar ssa-miR-200a-3p mature miRNA
Sequence 38 - UAAUACUGCCUGGUAAUGAUGAU - 60
Evidence experimental
Illumina [1]

Mature ssa-miR-200a-2-5p

Accession MIMAT0032477
Description Salmo salar ssa-miR-200a-2-5p mature miRNA
Sequence 1 - CAUCUUACGAGGCAGCAUUGGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482