Stem-loop ssa-mir-1-4

Accession

MI0026580

Description

Salmo salar ssa-mir-1-4 precursor miRNA

Gene family

MIPF0000038; mir-1

Sequence

ACAUACUUCUUUAUAUGCCCAUAugaacaagagcaacuaUGGAAUGUAAAGAAGUAUGUAU
((((((((((((((((..(((((((........))..))))).))))))))))))))))..

Structure

--                GC     --  aac 
  ACAUACUUCUUUAUAU  CCAUA  ug   a
  ||||||||||||||||  |||||  ||    
  UGUAUGAAGAAAUGUA  GGUau  ac   a
UA                -A     ca  gag 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-1-3p

• Accession: MIMAT0032472
• Description: Salmo salar ssa-miR-1-3p mature miRNA
• Sequence: 40 - UGGAAUGUAAAGAAGUAUGUAU - 61
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-1-4-5p

• Accession: MIMAT0032474
• Description: Salmo salar ssa-miR-1-4-5p mature miRNA
• Sequence: 1 - ACAUACUUCUUUAUAUGCCCAUA - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482