miRBase entry: ssa-mir-1-1

Stem-loop ssa-mir-1-1


Accession
MI0026579
Description
Salmo salar ssa-mir-1-1 precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

ACAUACUUCUUUAUGUACCCAUaugaacauaugauagcuaUGGAAUGUAAAGAAGUAUGUAU
((((((((((((((((..(((((...............))))).))))))))))))))))..

Structure
--                AC     ugaaca 
  ACAUACUUCUUUAUGU  CCAUa      u
  ||||||||||||||||  |||||      a
  UGUAUGAAGAAAUGUA  GGUau      u
UA                -A     cgauag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-1-3p

Accession MIMAT0032472
Description Salmo salar ssa-miR-1-3p mature miRNA
Sequence 41 - UGGAAUGUAAAGAAGUAUGUAU - 62
Evidence experimental
Illumina [1]

Mature ssa-miR-1-5p

Accession MIMAT0032473
Description Salmo salar ssa-miR-1-5p mature miRNA
Sequence 1 - ACAUACUUCUUUAUGUACCCAU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482