miRBase entry: ssa-mir-196b-1

Stem-loop ssa-mir-196b-1


Accession
MI0026563
Description
Salmo salar ssa-mir-196b-1 precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

UAGGUAGUUUCAAGUUGUUGGGcuggacgcguaucaCAGGAACCUGAAACUACCUGAA
((((((((((((.(((.(((................))).))).))))))))))))..

Structure
--            A   G   GGcugga 
  UAGGUAGUUUCA GUU UUG       c
  |||||||||||| ||| |||        
  GUCCAUCAAAGU CAA GAC       g
AA            C   G   acuaugc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-196b-5p

Accession MIMAT0032458
Description Salmo salar ssa-miR-196b-5p mature miRNA
Sequence 1 - UAGGUAGUUUCAAGUUGUUGGG - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-196b-3p

Accession MIMAT0032459
Description Salmo salar ssa-miR-196b-3p mature miRNA
Sequence 37 - CAGGAACCUGAAACUACCUGAA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482