miRBase entry: ssa-mir-183-1

Stem-loop ssa-mir-183-1


Accession
MI0026544
Description
Salmo salar ssa-mir-183-1 precursor miRNA
Gene family
MIPF0000066; mir-183

Literature search
1 open access papers mention ssa-mir-183-1
(5 sentences)

Sequence

UAUGGCACUGGUAGAAUUCACUgugacggcacacuaucagUGAAUUACCAUAGGGCCAUA
((((((..(((((..((((((((..(.(.....))..)))))))))))))....))))))

Structure
      --AC     GA        ug c g 
UAUGGC    UGGUA  AUUCACUg  a g c
||||||    |||||  ||||||||  | | a
AUACCG    ACCAU  UAAGUgac  u c c
      GGAU     --        ua - a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-183-5p

Accession MIMAT0032429
Description Salmo salar ssa-miR-183-5p mature miRNA
Sequence 1 - UAUGGCACUGGUAGAAUUCACU - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-183-3p

Accession MIMAT0032430
Description Salmo salar ssa-miR-183-3p mature miRNA
Sequence 41 - UGAAUUACCAUAGGGCCAUA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482