Stem-loop ssa-mir-17-3

Accession

MI0026533

Description

Salmo salar ssa-mir-17-3 precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

2 open access papers mention ssa-mir-17-3
(9 sentences)

Sequence

CAAAGUGCUUACAGUGCAGGUAGuguuauugaugaucuACUGCAGUGGAGGCACUUCUAGC
..(((((((..((.(((((.(((.((((....)))))))))))).))..))))))).....

Structure

---CA       UA  G     G   u    u 
     AAGUGCU  CA UGCAG UAG guua u
     |||||||  || ||||| ||| ||||  
     UUCACGG  GU ACGUC Auc uagu g
CGAUC       AG  G     -   -    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-17-5p

• Accession: MIMAT0032414
• Description: Salmo salar ssa-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-17-3-3p

• Accession: MIMAT0032415
• Description: Salmo salar ssa-miR-17-3-3p mature miRNA
• Sequence: 39 - ACUGCAGUGGAGGCACUUCUAGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482