miRBase entry: ssa-mir-16c

Stem-loop ssa-mir-16c


Accession
MI0026531
Description
Salmo salar ssa-mir-16c precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

UAGCAGCACGUAAAUAUUGGCGugagaauacagaccccgacCCCAAUAUUAGCUGUGCUGCUUC
.((((((((((.((((((((.((..(..........)..)).)))))))).)).))))))))..

Structure
-U        -  A        C  ga aaua 
  AGCAGCAC GU AAUAUUGG Gu  g    c
  |||||||| || |||||||| ||  |     
  UCGUCGUG CG UUAUAACC ca  c    a
CU        U  A        C  gc ccag 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-16c-5p

Accession MIMAT0032410
Description Salmo salar ssa-miR-16c-5p mature miRNA
Sequence 1 - UAGCAGCACGUAAAUAUUGGCG - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-16c-3p

Accession MIMAT0032411
Description Salmo salar ssa-miR-16c-3p mature miRNA
Sequence 42 - CCCAAUAUUAGCUGUGCUGCUUC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482