miRBase entry: ssa-mir-153a-1

Stem-loop ssa-mir-153a-1


Accession
MI0026517
Description
Salmo salar ssa-mir-153a-1 precursor miRNA
Gene family
MIPF0000050; mir-153


Sequence

GGCAUUUUUGUGAUUUGCAGCUaguagucuggguccagUUGCAUAGUCACAAAAAUGAUC
..((((((((((((((((((((.(..........).))))))).)))))))))))))...

Structure
-GG             -       a uagu 
   CAUUUUUGUGAUU UGCAGCU g    c
   ||||||||||||| ||||||| |     
   GUAAAAACACUGA ACGUUga c    u
CUA             U       c uggg 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-153a-5p

Accession MIMAT0032387
Description Salmo salar ssa-miR-153a-5p mature miRNA
Sequence 1 - GGCAUUUUUGUGAUUUGCAGCU - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-153a-3p

Accession MIMAT0032388
Description Salmo salar ssa-miR-153a-3p mature miRNA
Sequence 39 - UUGCAUAGUCACAAAAAUGAUC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482