miRBase entry: ssa-mir-146d-1

Stem-loop ssa-mir-146d-1


Accession
MI0026511
Description
Salmo salar ssa-mir-146d-1 precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
2 open access papers mention ssa-mir-146d-1
(4 sentences)

Sequence

UGAGAACUGAAUUCCAAGGGUUguauuucugaagucagCCCAUGGAGCUCAGUUCUUAAG
((((((((((.(((((.((((((.((((...)))))))))).))))).))))))))))..

Structure
--          A     A      u    c 
  UGAGAACUGA UUCCA GGGUUg auuu  
  |||||||||| ||||| |||||| |||| u
  AUUCUUGACU GAGGU CCCgac ugaa  
GA          C     A      -    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-146d-5p

Accession MIMAT0032376
Description Salmo salar ssa-miR-146d-5p mature miRNA
Sequence 1 - UGAGAACUGAAUUCCAAGGGUU - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-146d-3p

Accession MIMAT0032377
Description Salmo salar ssa-miR-146d-3p mature miRNA
Sequence 39 - CCCAUGGAGCUCAGUUCUUAAG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482