miRBase entry: ssa-mir-146b

Stem-loop ssa-mir-146b


Accession
MI0026510
Description
Salmo salar ssa-mir-146b precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
2 open access papers mention ssa-mir-146b
(14 sentences)

Sequence

UGAGAACUGAAGUCCAUAGAUGGuaguugcucagauagacAUCUAUGGACUCAAUUCUUCUU
.(((((.(((.(((((((((((...(((.....)))...)))))))))))))).)))))...

Structure
--U     C   A           Gua   g 
   GAGAA UGA GUCCAUAGAUG   guu c
   ||||| ||| |||||||||||   ||| u
   UUCUU ACU CAGGUAUCUAc   uag c
UUC     A   -           aga   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-146b-5p

Accession MIMAT0032374
Description Salmo salar ssa-miR-146b-5p mature miRNA
Sequence 1 - UGAGAACUGAAGUCCAUAGAUGG - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-146b-3p

Accession MIMAT0032375
Description Salmo salar ssa-miR-146b-3p mature miRNA
Sequence 41 - AUCUAUGGACUCAAUUCUUCUU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482