Stem-loop ssa-mir-140

Accession

MI0026499

Description

Salmo salar ssa-mir-140 precursor miRNA

Gene family

MIPF0000085; mir-140

Literature search

2 open access papers mention ssa-mir-140
(7 sentences)

Sequence

CAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucUACCACAGGGUAGAACCACGGA
..(((((((((((((.(((((((.((.((...)))).))))))).)))))))))))))...

Structure

-CA             A       u  c  c 
   GUGGUUUUACCCU UGGUAGg ua gu  
   ||||||||||||| ||||||| || || a
   CACCAAGAUGGGA ACCAUcu gu cg  
AGG             C       u  -  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-140-5p

• Accession: MIMAT0032359
• Description: Salmo salar ssa-miR-140-5p mature miRNA
• Sequence: 1 - CAGUGGUUUUACCCUAUGGUAG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-140-3p

• Accession: MIMAT0032360
• Description: Salmo salar ssa-miR-140-3p mature miRNA
• Sequence: 40 - UACCACAGGGUAGAACCACGGA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482