miRBase entry: ssa-mir-139-1

Stem-loop ssa-mir-139-1


Accession
MI0026497
Description
Salmo salar ssa-mir-139-1 precursor miRNA
Gene family
MIPF0000117; mir-139

Literature search
1 open access papers mention ssa-mir-139-1
(3 sentences)

Sequence

UCUACAGUGCAUGUGUCUCCAGUguuugugugcuacUGGAGAUAUGGCUCUGUUGGAAU
(((((((.((..(((((((((((((......)).))))))))))).)).))).))))..

Structure
--    -   U  AU           -  uu 
  UCUA CAG GC  GUGUCUCCAGU gu  g
  |||| ||| ||  ||||||||||| ||   
  AGGU GUC CG  UAUAGAGGUca cg  u
UA    U   U  -G           u  ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-139-5p

Accession MIMAT0032356
Description Salmo salar ssa-miR-139-5p mature miRNA
Sequence 1 - UCUACAGUGCAUGUGUCUCCAGU - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-139-3p

Accession MIMAT0032357
Description Salmo salar ssa-miR-139-3p mature miRNA
Sequence 37 - UGGAGAUAUGGCUCUGUUGGAAU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482