Stem-loop ssa-mir-138-4

Accession

MI0026496

Description

Salmo salar ssa-mir-138-4 precursor miRNA

Gene family

MIPF0000075; mir-138

Sequence

AGCUGGUGUUGUGAAUCAGGCCGcuauagugccagacacGGCUUCUUCCCAACACCAGGGU
..(((((((((.(((..((((((...............)))))).))).)))))))))...

Structure

-AG         U   UC      cuauag 
   CUGGUGUUG GAA  AGGCCG      u
   ||||||||| |||  ||||||      g
   GACCACAAC CUU  UUCGGc      c
UGG         C   -C      acagac 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-138-5p

• Accession: MIMAT0032352
• Description: Salmo salar ssa-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-138-4-3p

• Accession: MIMAT0032355
• Description: Salmo salar ssa-miR-138-4-3p mature miRNA
• Sequence: 40 - GGCUUCUUCCCAACACCAGGGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482