miRBase entry: ssa-mir-138-3

Stem-loop ssa-mir-138-3


Accession
MI0026495
Description
Salmo salar ssa-mir-138-3 precursor miRNA
Gene family
MIPF0000075; mir-138


Sequence

AGCUGGUGUUGUGAAUCAGGCCGcugugguguugagaccggCUACUUCCCAACACCAGGGUC
..(((((((((.(((...((((.....(((......)))))))..))).)))))))))....

Structure
--AG         U   UCA    Gcugu   gu 
    CUGGUGUUG GAA   GGCC     ggu  u
    ||||||||| |||   ||||     |||   
    GACCACAAC CUU   UCgg     cca  g
CUGG         C   -CA    -----   ga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-138-5p

Accession MIMAT0032352
Description Salmo salar ssa-miR-138-5p mature miRNA
Sequence 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-138-3-3p

Accession MIMAT0032354
Description Salmo salar ssa-miR-138-3-3p mature miRNA
Sequence 42 - CUACUUCCCAACACCAGGGUC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482