miRBase entry: ssa-mir-135c-2

Stem-loop ssa-mir-135c-2


Accession
MI0026490
Description
Salmo salar ssa-mir-135c-2 precursor miRNA
Gene family
MIPF0000028; mir-135


Sequence

UAUGGCUUUUUAUUCCUACGUGAggguagauguguucAUGUAGGGAUAGAAGCCACU
..((((((((.(((((((((((((.(......).)))))))))))))))))))))..

Structure
UA        U             g ua 
  UGGCUUUU AUUCCUACGUGAg g  g
  |||||||| ||||||||||||| |   
  ACCGAAGA UAGGGAUGUAcuu u  a
UC        -             g gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-135c-5p

Accession MIMAT0032348
Description Salmo salar ssa-miR-135c-5p mature miRNA
Sequence 1 - UAUGGCUUUUUAUUCCUACGUGA - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-135c-3p

Accession MIMAT0032349
Description Salmo salar ssa-miR-135c-3p mature miRNA
Sequence 38 - AUGUAGGGAUAGAAGCCACU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482