miRBase entry: ssa-mir-130d-1

Stem-loop ssa-mir-130d-1


Accession
MI0026472
Description
Salmo salar ssa-mir-130d-1 precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

GCUCUUUUAAUGUUGUACUACUgugaaaucagaugagCAGUGCAAUAUUAAAAGGGCA
(((((((((((((((((((.((.............)).))))))))))))))))))).

Structure
-                   A  gugaa 
 GCUCUUUUAAUGUUGUACU CU     a
 ||||||||||||||||||| ||     u
 CGGGAAAAUUAUAACGUGA ga     c
A                   C  guaga 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-130d-1-5p

Accession MIMAT0032327
Description Salmo salar ssa-miR-130d-1-5p mature miRNA
Sequence 1 - GCUCUUUUAAUGUUGUACUACU - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-130d-3p

Accession MIMAT0032328
Description Salmo salar ssa-miR-130d-3p mature miRNA
Sequence 38 - CAGUGCAAUAUUAAAAGGGCA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482