Stem-loop ssa-mir-130b-1

Accession

MI0026470

Description

Salmo salar ssa-mir-130b-1 precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

GCCCCUUUUGUAUUGUACUACUggugauccuucaaugaagCAGUGCAAUGUUAAAAGGGCA
((((.(((..(((((((((.((..(((....)))....)).)))))))))..))).)))).

Structure

-    C   UG         A  --gg   u 
 GCCC UUU  UAUUGUACU CU    uga c
 |||| |||  ||||||||| ||    |||  
 CGGG AAA  GUAACGUGA ga    acu c
A    A   UU         C  agua   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-130b-5p

• Accession: MIMAT0032324
• Description: Salmo salar ssa-miR-130b-5p mature miRNA
• Sequence: 1 - GCCCCUUUUGUAUUGUACUACU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-130b-3p

• Accession: MIMAT0032325
• Description: Salmo salar ssa-miR-130b-3p mature miRNA
• Sequence: 41 - CAGUGCAAUGUUAAAAGGGCA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482