miRBase entry: ssa-mir-126-4

Stem-loop ssa-mir-126-4


Accession
MI0026460
Description
Salmo salar ssa-mir-126-4 precursor miRNA
Gene family
MIPF0000115; mir-126


Sequence

CAUUAUUACUUUUGGUACGCGcucggccagucucaaacUCGUACCGUGAGUAAUAAUGCA
(((((((((((.(((((((.(...((......))...).))))))).)))))))))))..

Structure
--           U       C cuc  cc 
  CAUUAUUACUU UGGUACG G   gg  a
  ||||||||||| ||||||| |   ||   
  GUAAUAAUGAG GCCAUGC c   cu  g
AC           U       U aaa  cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-126-5p

Accession MIMAT0032311
Description Salmo salar ssa-miR-126-5p mature miRNA
Sequence 1 - CAUUAUUACUUUUGGUACGCG - 21
Evidence experimental
Illumina [1]

Mature ssa-miR-126-3p

Accession MIMAT0032312
Description Salmo salar ssa-miR-126-3p mature miRNA
Sequence 39 - UCGUACCGUGAGUAAUAAUGCA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482