Stem-loop ssa-mir-122-1

Accession

MI0026450

Description

Salmo salar ssa-mir-122-1 precursor miRNA

Gene family

MIPF0000095; mir-122

Literature search

1 open access papers mention ssa-mir-122-1
(31 sentences)

Sequence

UGGAGUGUGACAAUGGUGUUUGuguccucugcugucaAACGCCAUUAUUACACUAUAUA
...(((((((.(((((((((((.............))))))))))).))))))).....

Structure

--UGG       C           ugucc 
     AGUGUGA AAUGGUGUUUG     u
     ||||||| |||||||||||     c
     UCACAUU UUACCGCAAac     u
AUAUA       A           ugucg 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-122-5p

• Accession: MIMAT0032301
• Description: Salmo salar ssa-miR-122-5p mature miRNA
• Sequence: 1 - UGGAGUGUGACAAUGGUGUUUG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-122-3p

• Accession: MIMAT0032302
• Description: Salmo salar ssa-miR-122-3p mature miRNA
• Sequence: 38 - AACGCCAUUAUUACACUAUAUA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482