Stem-loop ssa-mir-106b

Accession

MI0026440

Description

Salmo salar ssa-mir-106b precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention ssa-mir-106b
(4 sentences)

Sequence

AAAAGUGCUUACAGUGCAGGUAguggcgaugcccagccuaCCUGCAGUAUGAGCACUUCUUUCA
..(((((((((.(.((((((((..(((........))))))))))).).)))))))))......

Structure

----AA         C G        gu   gau 
      AAGUGCUUA A UGCAGGUA  ggc   g
      ||||||||| | ||||||||  |||    
      UUCACGAGU U ACGUCCau  ccg   c
ACUUUC         A G        --   acc 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-106b-5p

• Accession: MIMAT0032288
• Description: Salmo salar ssa-miR-106b-5p mature miRNA
• Sequence: 1 - AAAAGUGCUUACAGUGCAGGUA - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-106b-3p

• Accession: MIMAT0032289
• Description: Salmo salar ssa-miR-106b-3p mature miRNA
• Sequence: 41 - CCUGCAGUAUGAGCACUUCUUUCA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482