miRBase entry: ssa-mir-106a-2

Stem-loop ssa-mir-106a-2


Accession
MI0026439
Description
Salmo salar ssa-mir-106a-2 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

UAAAGUGCUUACAGUGCAGGUAaugguuauucccuauaucuaCCGCAAUGUGAGCACUUCUGUC
..(((((((((((.(((.((((((((.......))))...))))))).))))))))))).....

Structure
---UA           G   A    ---    uu 
     AAGUGCUUACA UGC GGUA   augg  a
     ||||||||||| ||| ||||   ||||  u
     UUCACGAGUGU ACG CCau   uauc  u
CUGUC           A   -    cua    cc 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-106a-5p

Accession MIMAT0032286
Description Salmo salar ssa-miR-106a-5p mature miRNA
Sequence 1 - UAAAGUGCUUACAGUGCAGGUA - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-106a-3p

Accession MIMAT0032287
Description Salmo salar ssa-miR-106a-3p mature miRNA
Sequence 43 - CCGCAAUGUGAGCACUUCUGUC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482