miRBase entry: ssa-mir-100a-2

Stem-loop ssa-mir-100a-2


Accession
MI0026432
Description
Salmo salar ssa-mir-100a-2 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

AACCCGUAGAUCCGAACUUGUGuugucuggccacACAAGCUUGUGUCUAUAGGUAUG
.(((.((((((.(((.(((((((.((...)).))))))).))).)))))).)))...

Structure
--A   C      C   A       u  c 
   ACC GUAGAU CGA CUUGUGu gu  
   ||| |||||| ||| ||||||| || u
   UGG UAUCUG GUU GAACAca cg  
GUA   A      U   C       c  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-100a-5p

Accession MIMAT0032277
Description Salmo salar ssa-miR-100a-5p mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-100a-2-3p

Accession MIMAT0032279
Description Salmo salar ssa-miR-100a-2-3p mature miRNA
Sequence 35 - ACAAGCUUGUGUCUAUAGGUAUG - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482