Stem-loop ssa-mir-100a-1

Accession

MI0026431

Description

Salmo salar ssa-mir-100a-1 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

AACCCGUAGAUCCGAACUUGUGcuaacugaccucACAAGCUUGAUUCUAUAGGUCU
.(((.(((((..(((.((((((...........)))))).)))..))))).)))..

Structure

-A   C     UC   A      cuaa 
  ACC GUAGA  CGA CUUGUG    c
  ||| |||||  ||| ||||||    u
  UGG UAUCU  GUU GAACAc    g
UC   A     UA   C      ucca 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-100a-5p

• Accession: MIMAT0032277
• Description: Salmo salar ssa-miR-100a-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-100a-3p

• Accession: MIMAT0032278
• Description: Salmo salar ssa-miR-100a-3p mature miRNA
• Sequence: 35 - ACAAGCUUGAUUCUAUAGGUCU - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482