miRBase entry: ssa-let-7h

Stem-loop ssa-let-7h


Accession
MI0026428
Description
Salmo salar ssa-let-7h precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ssa-let-7h
(5 sentences)

Sequence

UGAGGUAGUAAGUUGUGUUGUUguuggggaucaggauagugcgccccguacgggagauaaCUAUACAACUUACUGCCUUCCU
.(((((((((((((((((.((((((((((..((......))..))))........)))))).)))))))))))))))))...

Structure
--U                 U      --------    au  gg 
   GAGGUAGUAAGUUGUGU GUUguu        gggg  ca  a
   ||||||||||||||||| ||||||        ||||  ||   
   UUCCGUCAUUCAACAUA Caauag        cccc  gu  u
UCC                 U      agggcaug    gc  ga 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-let-7h-5p

Accession MIMAT0032272
Description Salmo salar ssa-let-7h-5p mature miRNA
Sequence 1 - UGAGGUAGUAAGUUGUGUUGUU - 22
Evidence experimental
Illumina [1]

Mature ssa-let-7h-3p

Accession MIMAT0032273
Description Salmo salar ssa-let-7h-3p mature miRNA
Sequence 61 - CUAUACAACUUACUGCCUUCCU - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482