Stem-loop cpa-MIR396

Accession

MI0026374

Description

Carica papaya cpa-MIR396 precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

2 open access papers mention cpa-MIR396
(10 sentences)

Sequence

UUCCACAGCUUUCUUGAACUGcaugaucuguauuaggagaaaauucuguauaucgauugcgguucaauaaagcugugggaag
((((((((((((.((((((((((..(((.((((..(((......)))..)))).))))))))))))).))))))))))))..

Structure

--            C          ug   u    ua   ga 
  UUCCACAGCUUU UUGAACUGca  auc guau  gga  a
  |||||||||||| ||||||||||  ||| ||||  |||   
  agggugucgaaa aacuuggcgu  uag uaua  ucu  a
ga            u          --   c    ug   ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR396

• Accession: MIMAT0031822
• Description: Carica papaya cpa-miR396 mature miRNA
• Sequence: 1 - UUCCACAGCUUUCUUGAACUG - 21
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682