Stem-loop cpa-MIR171a

Accession

MI0026358

Description

Carica papaya cpa-MIR171a precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

1 open access papers mention cpa-MIR171a
(1 sentences)

Sequence

uguuggaauggcucaaucaaaucaaaucuccaaagucuuugauuuugggucuuuuaauuUGAUUGAGCCGUGCCAAUAUC
((((((.(((((((((((((((.(((..(((((((((...)))))))))...))).))))))))))))))).))))))..

Structure

--      a               c   -uc         u 
  uguugg auggcucaaucaaau aaa   uccaaaguc  
  |||||| ||||||||||||||| |||   ||||||||| u
  AUAACC UGCCGAGUUAGUuua uuu   ggguuuuag  
CU      G               a   ucu         u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR171a

• Accession: MIMAT0031806
• Description: Carica papaya cpa-miR171a mature miRNA
• Sequence: 60 - UGAUUGAGCCGUGCCAAUAUC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682