miRBase entry: cpa-MIR169

Stem-loop cpa-MIR169


Accession
MI0026357
Description
Carica papaya cpa-MIR169 precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
1 open access papers mention cpa-MIR169
(8 sentences)

Sequence

CAGCCAAGAAUGACUUGCCGacucuucuauuguccuugcuauucucuggcgaugacucacagaguuuuaccaaauuggcaagucguccuuggcuaca
.(((((((.((((((((((((((((......(((.((((((.....)))))).)))....))))))..........)))))))))).)))))))...

Structure
--C       A          ----------      ucuauu   c      u 
   AGCCAAG AUGACUUGCC          Gacucu      guc uugcua u
   ||||||| ||||||||||          ||||||      ||| |||||| c
   ucgguuc ugcugaacgg          uugaga      cag agcggu u
aca       c          uuaaaccauu      --cacu   u      c 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature cpa-miR169

Accession MIMAT0031805
Description Carica papaya cpa-miR169 mature miRNA
Sequence 1 - CAGCCAAGAAUGACUUGCCG - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682