miRBase entry: cpa-MIR167d

Stem-loop cpa-MIR167d


Accession
MI0026356
Description
Carica papaya cpa-MIR167d precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
2 open access papers mention cpa-MIR167d
(2 sentences)

Sequence

UGAAGCUGCCAGCAUGAUCUGAgcuuuuuccguguugauuugccauaucaggagagcauagaucauguggcaguuucauc
(((((((((((.(((((((((.((((..(((....((((.......))))))))))).))))))))))))))))))))..

Structure
--           G         A    uu   gugu    uu 
  UGAAGCUGCCA CAUGAUCUG gcuu  ucc    ugau  g
  ||||||||||| ||||||||| ||||  |||    ||||  c
  acuuugacggu guacuagau cgag  agg    acua  c
cu           -         a    --   ----    ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cpa-miR167d

Accession MIMAT0031804
Description Carica papaya cpa-miR167d mature miRNA
Sequence 1 - UGAAGCUGCCAGCAUGAUCUGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682