Stem-loop bma-mir-750

Accession

MI0026315

Description

Brugia malayi bma-mir-750 precursor miRNA

Sequence

acaaguuugugucagucggagguagggucuuaggcauugcuaaugcgacguugCCAGAUCUGUCCUUCGGCUAACauuggcuuau
..(((((.((((.(((((((((..((((((..((((((((....))))...))))))))))..))))))))).)))).)))))..

Structure

ac     u    c         ua      ua    ---    u 
  aaguu gugu agucggagg  gggucu  ggca   uugc a
  ||||| |||| |||||||||  ||||||  ||||   ||||  
  uucgg uaCA UCGGCUUCC  UCUAGA  CCgu   agcg a
ua     u    A         UG      --    ugc    u 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold43: 83092-83176 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-750

Mature bma-miR-750

• Accession: MIMAT0031760
• Description: Brugia malayi bma-miR-750 mature miRNA
• Sequence: 54 - CCAGAUCUGUCCUUCGGCUAAC - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498