Stem-loop bma-mir-283

Accession

MI0026297

Description

Brugia malayi bma-mir-283 precursor miRNA

Gene family

MIPF0000054; mir-216

Sequence

uucagaauugauuguccaaggcCAAUAUCAGCAGGUUUUGUCUGGcuaaauuuagguccagaccuaccugucgauauugcccgcgggcagucacguaccuuau
........(((((((((..((.(((((((.((((((...((((((((.......)).))))))..)))))).))))))).))..)))))))))..........

Structure

--uucagaau         aa  c       A      UUU      -  aa 
          ugauugucc  gg CAAUAUC GCAGGU   GUCUGG cu  a
          |||||||||  || ||||||| ||||||   |||||| ||  u
          acugacggg  cc guuauag ugucca   cagacc gg  u
uauuccaugc         cg  c       c      -uc      u  au 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold15: 750997-751099 [+]

Mature bma-miR-283

• Accession: MIMAT0031746
• Description: Brugia malayi bma-miR-283 mature miRNA
• Sequence: 23 - CAAUAUCAGCAGGUUUUGUCUGG - 45
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498