miRBase entry: bma-mir-250

Stem-loop bma-mir-250


Accession
MI0026292
Description
Brugia malayi bma-mir-250 precursor miRNA
Gene family
MIPF0000283; mir-250


Sequence

gaauauucauggcuaagcuugaacugccaguggucuugugauccguugagaaauuuuggaucgAAUCACAGCCAACUGGUGGCUCAgcuugcugugugcugcacuuuu
.......((((((.(((((.((.(((((((((((..((((((.((((.(((...))).)).)).))))))))).)))))))).)))))))))))))............

Structure
-----gaauauu      u     u  a        -   cu      c  -  g   a 
            cauggc aagcu ga cugccagu ggu  ugugau cg uu aga  
            |||||| ||||| || |||||||| |||  |||||| || || ||| a
            gugucg uucgA CU GGUGGUCA CCG  ACACUA gc ag uuu  
uuuucacgucgu      -     -  C        A   --      A  u  g   u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold435: 3185-3292 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from bma-mir-250
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-250

Accession MIMAT0031743
Description Brugia malayi bma-miR-250 mature miRNA
Sequence 64 - AAUCACAGCCAACUGGUGGCUCA - 86
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4