miRBase entry: bma-mir-1175

Stem-loop bma-mir-1175


Accession
MI0026288
Description
Brugia malayi bma-mir-1175 precursor miRNA
Gene family
MIPF0000715; mir-1175


Sequence

aagauauuuuggacggucacgaaaguggagguuaggaucugcacuaaacauuucaaaucagUGAGAUUCUUAUUCCUCCACUUACuugccuguucucuaucugcauuc
.(((((....((((((.((.(.(((((((((..(((((((.((((..............)))))))))))....))))))))).).)).))))))..)))))......

Structure
-----a     uuuu      u  c a         --uu       g    aaacau 
      agaua    ggacgg ca g aaguggagg    aggaucu cacu      u
      |||||    |||||| || | |||||||||    ||||||| ||||       
      ucuau    cuuguc gu C UUCACCUCC    UCUUAGA GUga      u
cuuacg     --cu      c  u A         UUAU       -    cuaaac 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold43: 83421-83528 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-1175
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-1175

Accession MIMAT0031739
Description Brugia malayi bma-miR-1175 mature miRNA
Sequence 62 - UGAGAUUCUUAUUCCUCCACUUAC - 85
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498