miRBase entry: bbe-let-7a-1

Stem-loop bbe-let-7a-1


Accession
MI0026170
Description
Branchiostoma belcheri bbe-let-7a-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention bbe-let-7a-1
(3 sentences)

Sequence

cugaggUGAGGUAGUAGGUUGUAUAGUUgagaaguacaacauuggagauGACUGUACAACCCGUUACCUUuuuucgggucau
((((((.(((((((..((((((((((((.....................))))))))))))..))))))).)))))).....

Structure
-----      U       UA            gagaaguac 
     cugagg GAGGUAG  GGUUGUAUAGUU         a
     |||||| |||||||  ||||||||||||         a
     ggcuuu UUCCAUU  CCAACAUGUCAG         c
uacug      u       GC            uagagguua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bbe-let-7a-5p

Accession MIMAT0031568
Description Branchiostoma belcheri bbe-let-7a-5p mature miRNA
Sequence 7 - UGAGGUAGUAGGUUGUAUAGUU - 28
Evidence not_experimental

Mature bbe-let-7a-3p

Accession MIMAT0031569
Description Branchiostoma belcheri bbe-let-7a-3p mature miRNA
Sequence 50 - GACUGUACAACCCGUUACCUU - 70
Evidence not_experimental

References

  1. PubMed ID: 23335747
    Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
    "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
    "J Immunol (2013) 190:1491-1500