Stem-loop ppe-MIR5225

Accession

MI0026159

Description

Prunus persica ppe-MIR5225 precursor miRNA

Gene family

MIPF0001388; MIR5225

Sequence

aucaaauucguaggggcuUCUGUCGUAGGAGAGAUGGCGCcaaaugcaaucauauugguuugguacuaauuaugguagaauuaaagcuaagccaauuugggcaccggguuUCAUCUCUCCUCGACUGAAgccccucacuuugau
((((((...(((((((((((.((((.(((((((((((.(((...(((..(((.(((((((((((..(((((.......)))))..))))))))))).))))))...))).))))))))))))))).))))))))).))))))))

Structure

      uuc  -         U    U           C   aaa   aa   u           ac     au 
aucaaa   gu aggggcuUC GUCG AGGAGAGAUGG GCc   ugc  uca auugguuuggu  uaauu  g
||||||   || ||||||||| |||| ||||||||||| |||   |||  ||| |||||||||||  |||||  g
uaguuu   ca uccccgAAG CAGC UCCUCUCUACU ugg   acg  ggu uaaccgaaucg  auuaa  u
      ---  c         U    -           u   gcc   --   u           aa     ga 

Annotation confidence Not enough data

Genome context

chrG3: 25326751-25326894 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR5225

Mature ppe-miR5225-5p

• Accession: MIMAT0031548
• Description: Prunus persica ppe-miR5225-5p mature miRNA
• Sequence: 19 - UCUGUCGUAGGAGAGAUGGCGC - 40
• Evidence: experimental ; Illumina [1]

Mature ppe-miR5225-3p

• Accession: MIMAT0031549
• Description: Prunus persica ppe-miR5225-3p mature miRNA
• Sequence: 111 - UCAUCUCUCCUCGACUGAA - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149