miRBase entry: ppe-MIR2111a

Stem-loop ppe-MIR2111a


Accession
MI0026141
Description
Prunus persica ppe-MIR2111a precursor miRNA
Gene family
MIPF0000754; MIR2111


Sequence

guaaggauugggUAAUCUGCAUCCUGAGGUUUAaaucaacuuuauauauauuuguuguaucuagcccucgggggccagauuaccucauccucac
((.(((((.((((((((((..((((((((.(((.((((((.............)))).)).))).))))))))..)))))))))).))))).))

Structure
  a     u          CA        U   a  -    uuuau 
gu aggau gggUAAUCUG  UCCUGAGG UUA au caac     a
|| ||||| ||||||||||  |||||||| ||| || ||||     u
ca uccua uccauuagac  ggggcucc gau ua guug     a
  c     c          cg        c   c  u    uuuau 


Annotation confidence Not enough data
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Genome context
chrG4: 5127334-5127427 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppe-MIR2111a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR2111a

Accession MIMAT0031517
Description Prunus persica ppe-miR2111a mature miRNA
Sequence 13 - UAAUCUGCAUCCUGAGGUUUA - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149